DMAPS A Database of Multiple Alignments for Protein Structures
DMAPS database contains pre-computed multiple structure alignments for protein chains in the Protein Data Bank (PDB). Automated structure alignments have been generated for classified protein families using CE-MC algorithm. Alignments have been built only for those families with atleast three members. Currently, multiple structure alignments are avaialable for 3050 SCOP-, 3087 CATH-, 664 ENZYME- and 1707 CE-based families. Users will be able to retrieve multiple alignments for a given PDB chain classfied by one of these criteria. Multiple alignments can be downloaded in six different formats, i.e., JOY/html, TEXT, FASTA, PDB (superimposed coordinates), JOY/rtf, JOY/post-script.
